miRBase entry: ptr-mir-412

Stem-loop ptr-mir-412


Accession
MI0008660
Description
Pan troglodytes ptr-mir-412 precursor miRNA
Gene family
MIPF0000192; mir-412


Sequence

ugggguacggggauggauggucgaccaguuggaaaguaauuguuucuaauguACUUCACCUGGUCCACUAGCCGUccguauccgcugcag
..((((((..((((((.((((.((((((.(((..((((((((....)))).))))))).)))))).)))).)))))))))))).......

Structure
-----ug      gg      a    c      u   aa    -    u 
       ggguac  ggaugg uggu gaccag ugg  agua auug u
       ||||||  |||||| |||| |||||| |||  |||| ||||  
       ccuaug  ccUGCC AUCA CUGGUC ACU  UCAu uaau u
gacgucg      --      G    C      C   --    g    c 


Annotation confidence Not enough data
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Genome context
chr14: 86313697-86313786 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-412
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-412

Accession MIMAT0008139
Description Pan troglodytes ptr-miR-412 mature miRNA
Sequence 53 - ACUUCACCUGGUCCACUAGCCGU - 75
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70