miRBase entry: ptr-mir-424

Stem-loop ptr-mir-424


Accession
MI0008664
Description
Pan troglodytes ptr-mir-424 precursor miRNA
Gene family
MIPF0000164; mir-322

Literature search
1 open access papers mention ptr-mir-424
(1 sentences)

Sequence

cgaggggauaCAGCAGCAAUUCAUGUUUUGAAguguucuaaaugguucaaaacgugaggcgcugcuauacccccucguggggaagguagaagguggg
(((((((.((.((((((..(((((((((((((.((((...)))).)))))))))))))..)))))).)).)))))))....................

Structure
--------------------       a  C      AA             g    c 
                    cgagggg ua AGCAGC  UUCAUGUUUUGAA uguu  
                    ||||||| || ||||||  ||||||||||||| |||| u
                    gcucccc au ucgucg  gagugcaaaacuu guaa  
ggguggaagauggaaggggu       c  a      cg             g    a 


Annotation confidence Not enough data
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Genome context
chrX: 134417241-134417337 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-424
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-424

Accession MIMAT0008143
Description Pan troglodytes ptr-miR-424 mature miRNA
Sequence 11 - CAGCAGCAAUUCAUGUUUUGAA - 32
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70