miRBase entry: ptr-mir-425

Stem-loop ptr-mir-425


Accession
MI0008665
Description
Pan troglodytes ptr-mir-425 precursor miRNA
Gene family
MIPF0000242; mir-425


Sequence

gaaagcgcuuuggAAUGACACGAUCACUCCCGUUGAgugggcacccgagaagccaucgggaaugucguguccgcccagugcucuuu
.((((.((.((((...(((((((.((.(((((....((((............))))))))).)))))))))...)))).)).))))

Structure
g    c  u    AAU       U  C     UUGA    gcacc 
 aaag gc uugg   GACACGA CA UCCCG    gugg     c
 |||| || ||||   ||||||| || |||||    ||||      
 uuuc cg gacc   cugugcu gu agggc    uacc     g
-    u  u    cgc       -  a     ----    gaaga 


Annotation confidence Not enough data
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Genome context
chr3: 50084216-50084301 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-425
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-425

Accession MIMAT0008144
Description Pan troglodytes ptr-miR-425 mature miRNA
Sequence 14 - AAUGACACGAUCACUCCCGUUGA - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70