miRBase entry: ptr-mir-449a

Stem-loop ptr-mir-449a


Accession
MI0008670
Description
Pan troglodytes ptr-mir-449a precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

ugugugugaugagcUGGCAGUGUAUUGUUAGCUCGUugaauaugugaauggcaucggcuaacaugcaacugcugucuuauugcauauaca
(((((((((((((.(((((((((((.((((((.((.((..(((....))).)).)))))))))))).))))))).)))))))))))))..

Structure
--             c       -    U      U  U  aa   g 
  ugugugugaugag UGGCAGU GUAU GUUAGC CG ug  uau u
  ||||||||||||| ||||||| |||| |||||| || ||  |||  
  auauacguuauuc gucguca cgua caaucg gc ac  gua g
ac             u       a    -      -  u  -g   a 


Annotation confidence Not enough data
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Genome context
chr5: 59474635-59474724 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-449a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-449a

Accession MIMAT0008149
Description Pan troglodytes ptr-miR-449a mature miRNA
Sequence 15 - UGGCAGUGUAUUGUUAGCUCGU - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70