miRBase entry: ptr-mir-449b

Stem-loop ptr-mir-449b


Accession
MI0008671
Description
Pan troglodytes ptr-mir-449b precursor miRNA
Gene family
MIPF0000133; mir-449


Sequence

gaccugaaucagguAGGCAGUGUAUUGUUAGCUGGCugcuugggucaagucagcagccacaacuacccugccacuugcuucuggauaaauucuucu
..((.(((.(((((.(((((.(((..(((.(.((((((((.((......))))))))))))))))).)))))))))).))).))............

Structure
----------ga  u   u     A     U   UU   A C        u  gu 
            cc gaa caggu GGCAG GUA  GUU G UGGCugcu gg  c
            || ||| ||||| ||||| |||  ||| | |||||||| ||   
            gg cuu guuca ccguc cau  caa c accgacga cu  a
ucuucuuaaaua  u   c     -     c   --   - -        -  ga 


Annotation confidence Not enough data
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Genome context
chr5: 59474515-59474610 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-449b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-449b

Accession MIMAT0008150
Description Pan troglodytes ptr-miR-449b mature miRNA
Sequence 15 - AGGCAGUGUAUUGUUAGCUGGC - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70