miRBase entry: ptr-mir-450a-1

Stem-loop ptr-mir-450a-1


Accession
MI0008672
Description
Pan troglodytes ptr-mir-450a-1 precursor miRNA
Gene family
MIPF0000128; mir-450


Sequence

aaacgauacuaaacuguUUUUGCGAUGUGUUCCUAAUAUgcacuauaaauauauugggaacauuuugcauguauaguuuuguaucaauau
....(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).))))).....

Structure
-aaac     u       UUU     U              cac 
     gauac aaacugu   UGCGA GUGUUCCUAAUAUg   u
     ||||| |||||||   ||||| ||||||||||||||   a
     cuaug uuugaua   acguu uacaaggguuauau   u
uauaa     u       ugu     u              aaa 


Annotation confidence Not enough data
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Genome context
chrX: 134410998-134411087 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-450a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-450a

Accession MIMAT0008151
Description Pan troglodytes ptr-miR-450a mature miRNA
Sequence 18 - UUUUGCGAUGUGUUCCUAAUAU - 39
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70