miRBase entry: ptr-mir-450a-2

Stem-loop ptr-mir-450a-2


Accession
MI0008673
Description
Pan troglodytes ptr-mir-450a-2 precursor miRNA
Gene family
MIPF0000128; mir-450


Sequence

ccaaagaaagaugcuaaacuauUUUUGCGAUGUGUUCCUAAUAUguaauauaaauguauuggggacauuuugcauucauaguuuuguaucaauaauaug
.........(((((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).))))).........

Structure
ccaaagaaa     u       UUU     U               aa 
         gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
         ||||| |||||||   ||||| |||||||||||||||  a
         cuaug uuugaua   acguu uacagggguuaugua  u
guauaauaa     u       cuu     u               aa 


Annotation confidence Not enough data
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Genome context
chrX: 134411165-134411263 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from ptr-mir-450a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-450a

Accession MIMAT0008151
Description Pan troglodytes ptr-miR-450a mature miRNA
Sequence 23 - UUUUGCGAUGUGUUCCUAAUAU - 44
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70