miRBase entry: ptr-mir-454

Stem-loop ptr-mir-454


Accession
MI0008678
Description
Pan troglodytes ptr-mir-454 precursor miRNA
Gene family
MIPF0000174; mir-454

Literature search
1 open access papers mention ptr-mir-454
(8 sentences)

Sequence

ucuguuuaucaccagauccuagaacccuaucaauauugucucugcuguguaaauaguucugagUAGUGCAAUAUUGCUUAUAGGGUuuugguguuuggaaagaacaaugggcag
.(((((((((.((((((.((((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))))).))))))...))....)))))))

Structure
u       ----  --a      c            ---         ----   --u     g 
 cuguuua    uc   ccagau cuagaacccuau   caauauugu    cuc   gcugu u
 |||||||    ||   |||||| ||||||||||||   |||||||||    |||   |||||  
 gacgggu    ag   gguuug gguuuUGGGAUA   GUUAUAACG    gag   ugaua a
-       aaca  aaa      u            UUC         UGAU   ucu     a 


Annotation confidence Not enough data
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Genome context
chr17: 58441228-58441341 [-]

Database links

Mature ptr-miR-454

Accession MIMAT0008156
Description Pan troglodytes ptr-miR-454 mature miRNA
Sequence 64 - UAGUGCAAUAUUGCUUAUAGGGU - 86
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70