miRBase entry: ptr-mir-485

Stem-loop ptr-mir-485


Accession
MI0008681
Description
Pan troglodytes ptr-mir-485 precursor miRNA
Gene family
MIPF0000201; mir-485


Sequence

cuuggagagaggcuggccgugaugaauucgauucaucaaagcgaGUCAUACACGGCUCUCCUCUCUuuuagu
((.(((((((((..(((((((((((.((((...........)))))))).)))))))..))))))))).)).

Structure
-  u         cu       -    a    auuc 
 cu ggagagagg  ggccgug auga uucg    a
 || |||||||||  ||||||| |||| ||||    u
 ga uuUCUCUCC  UCGGCAC UACU Gagc    c
u  u         UC       A    -    gaaa 


Annotation confidence Not enough data
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Genome context
chr14: 86303654-86303725 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from ptr-mir-485
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-485

Accession MIMAT0008159
Description Pan troglodytes ptr-miR-485 mature miRNA
Sequence 45 - GUCAUACACGGCUCUCCUCUCU - 66
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70