Stem-loop sequence ptr-mir-487a

AccessionMI0008683 (change log)
DescriptionPan troglodytes miR-487a stem-loop
Gene family MIPF0000018; mir-154
Literature search

1 open access papers mention ptr-mir-487a
(4 sentences)

Stem-loop
   -     u     g   uua      c    -    - uga 
5'  guacu gaaga ugg   ucccug ugug uucg c   a
    ||||| ||||| |||   |||||| |||| |||| |   u
3'  uauga uuuuu acc   agggac auac aagc g   u
   c     c     g   uac      -    u    a uau 
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr14: 86300680-86300758 [+]
intergenic
Clustered miRNAs
< 10kb from ptr-mir-487a
ptr-mir-1185-1chr14: 86291220-86291304 [+]
ptr-mir-1185-2chr14: 86292441-86292525 [+]
ptr-mir-381chr14: 86294164-86294237 [+]
ptr-mir-487bchr14: 86294699-86294781 [+]
ptr-mir-539chr14: 86295556-86295632 [+]
ptr-mir-889chr14: 86296136-86296213 [+]
ptr-mir-544chr14: 86296887-86296976 [+]
ptr-mir-655chr14: 86297767-86297874 [+]
ptr-mir-487achr14: 86300680-86300758 [+]
ptr-mir-382chr14: 86302540-86302614 [+]
ptr-mir-134chr14: 86302921-86302992 [+]
ptr-mir-668chr14: 86303493-86303557 [+]
ptr-mir-485chr14: 86303654-86303725 [+]
ptr-mir-453chr14: 86304425-86304503 [+]
ptr-mir-154chr14: 86308003-86308086 [+]
ptr-mir-496chr14: 86308822-86308922 [+]
ptr-mir-377chr14: 86310299-86310366 [+]
Database links

Mature sequence ptr-miR-487a

Accession MIMAT0008161
Sequence

48 - 

aaucauacagggacauccaguu

 - 69

Get sequence
Evidence by similarity; MI0002471
Predicted targets

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).