miRBase entry: ptr-mir-487b

Stem-loop ptr-mir-487b


Accession
MI0008684
Description
Pan troglodytes ptr-mir-487b precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

ugguacuuggagagugguuaucccuguccuguucguuuugcucaugucgAAUCGUACAGGGUCAUCCACUUuuucaguaucaa
(((((((.(((((((((....((((((.(.(((((............))))).).))))))....))))))))).))))))).

Structure
-       u         uuau      c u     uuuug 
 ugguacu ggagagugg    cccugu c guucg     c
 ||||||| |||||||||    |||||| | |||||      
 acuauga uuuUUCACC    GGGACA G UAAgc     u
a       c         UACU      U C     uguac 


Annotation confidence Not enough data
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Genome context
chr14: 86294699-86294781 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from ptr-mir-487b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-487b

Accession MIMAT0008162
Description Pan troglodytes ptr-miR-487b mature miRNA
Sequence 50 - AAUCGUACAGGGUCAUCCACUU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70