miRBase entry: ptr-mir-489

Stem-loop ptr-mir-489


Accession
MI0008686
Description
Pan troglodytes ptr-mir-489 precursor miRNA
Gene family
MIPF0000111; mir-489


Sequence

guggcagcuugguggucguaugugugacgccauuuacuugaaccuuuaggaGUGACAUCACAUAUACGGCAGCuaaacugcua
.((((((.(((((.(((((((((((((.(.((((..(((((....))))))))).).))))))))))))).))))).))))))

Structure
g      c     g             c c    ua     a 
 uggcag uuggu gucguauguguga g cauu  cuuga c
 |||||| ||||| ||||||||||||| | ||||  |||||  
 aucguc aauCG CGGCAUAUACACU C GUGa  ggauu c
-      a     A             A A    --     u 


Annotation confidence Not enough data
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Genome context
chr7: 96353454-96353536 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-489
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-489

Accession MIMAT0008164
Description Pan troglodytes ptr-miR-489 mature miRNA
Sequence 52 - GUGACAUCACAUAUACGGCAGC - 73
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70