Stem-loop ptr-mir-495

Accession

MI0008691

Description

Pan troglodytes ptr-mir-495 precursor miRNA

Literature search

2 open access papers mention ptr-mir-495
(5 sentences)

Sequence

9562 reads, 73.0 reads per million, 24 experiments

gguaccugaaaaGAAGUUGCCCAUGUUAUUUUCGcuuuauaugugacgAAACAAACAUGGUGCACUUCUUUuucgguauca
((((((.((((((((((.(((((((((..((((((.........).)))))..))))))).)))))))))))).)))))).

Structure

-      u          U  -       AU     - uuu 
 gguacc gaaaaGAAGU GC CCAUGUU  UUUCG c   a
 |||||| |||||||||| || |||||||  ||||| |   u
 cuaugg uuUUUCUUCA CG GGUACAA  AAAgc g   a
a      c          -  U       AC     a ugu 

Annotation confidence High

Genome context

chr14: 86282275-86282355 [+]

Clustered miRNAs

16 other miRNAs are < 10 kb from ptr-mir-495

Mature ptr-miR-495-5p

• Accession: MIMAT0052372
• Description: Pan troglodytes ptr-miR-495-5p mature miRNA
• Sequence: 13 - GAAGUUGCCCAUGUUAUUUUCG - 34
• Evidence: not_experimental

Mature ptr-miR-495-3p

• Accession: MIMAT0008169
• Description: Pan troglodytes ptr-miR-495-3p mature miRNA
• Sequence: 49 - AAACAAACAUGGUGCACUUCUUU - 71
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70