miRBase entry: ptr-mir-496

Stem-loop ptr-mir-496


Accession
MI0008692
Description
Pan troglodytes ptr-mir-496 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

ccaagucagguacucgaauggagguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUCcuuucgguacucaauucuucuuggg
(((((...(((((.((((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))........))))).

Structure
-     -----uca     u    u        u     gu         uua 
 ccaag        gguac cgaa ggagguug ccaug  guguucauu   u
 |||||        ||||| |||| |||||||| |||||  |||||||||    
 gguuc        ucaug gcuu cCUCUAAC GGUAC  UAUGAGUag   u
g     uucuuaac     -    u        C     AU         uau 


Annotation confidence Not enough data
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Genome context
chr14: 86308822-86308922 [+]
Clustered miRNAs
13 other miRNAs are < 10 kb from ptr-mir-496
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-496

Accession MIMAT0008170
Description Pan troglodytes ptr-miR-496 mature miRNA
Sequence 55 - UGAGUAUUACAUGGCCAAUCUC - 76
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70