miRBase entry: ptr-mir-498

Stem-loop ptr-mir-498


Accession
MI0008693
Description
Pan troglodytes ptr-mir-498 precursor miRNA
Gene family
MIPF0000463; mir-498


Sequence

acccucccuugggaagugaagcucaggcugugaUUUCAAGCCAGGGGGCGUUUUUCuauaacuggaugaaaagcaccuccagggcuugaagcucacaguuugagagcaaucgucuaaggaaguu
...((.(((((((........(((((((((((((((((((((.(((((.(((((((...........))))))).)))))..))))))))).))))))))))))........))))))).))..

Structure
acc  c       aagugaag            -         -A     C       uaua 
   cu ccuuggg        cucaggcuguga UUUCAAGCC  GGGGG GUUUUUC    a
   || |||||||        |||||||||||| |||||||||  ||||| |||||||    c
   ga ggaaucu        gaguuugacacu gaaguucgg  ccucc cgaaaag    u
-uu  a       gcuaacga            c         ga     a       uagg 


Annotation confidence Not enough data
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Genome context
chr19: 56022328-56022451 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-498
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-498

Accession MIMAT0008171
Description Pan troglodytes ptr-miR-498 mature miRNA
Sequence 34 - UUUCAAGCCAGGGGGCGUUUUUC - 56
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70