miRBase entry: ptr-mir-499

Stem-loop ptr-mir-499


Accession
MI0008694
Description
Pan troglodytes ptr-mir-499 precursor miRNA
Gene family
MIPF0000173; mir-499

Literature search
1 open access papers mention ptr-mir-499
(1 sentences)

Sequence

cccuguccccugugccuugggcgggcagcuguuaagacuugcagugauguuuaacuccucuccacgugAACAUCACAGCAAGUCUGUGCUgcuucccgucccuacgcugccugggcagggu
((((((((.....((...(((((((.(((.((..((((((((.((((((((((.............)))))))))).))))))))..)).))).)))).)))...)).....)))))))).

Structure
-        ccugu  cuu   -    c   u  ua        a          acucc 
 cccugucc     gc   ggg cggg agc gu  agacuugc gugauguuua     u
 ||||||||     ||   ||| |||| ||| ||  |||||||| ||||||||||     c
 gggacggg     cg   ccc gccc ucg CG  UCUGAACG CACUACAAgu     u
u        uccgu  cau   u    u   U  UG        A          gcacc 


Annotation confidence Not enough data
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Genome context
chr20: 36436961-36437081 [+]

Database links

Mature ptr-miR-499

Accession MIMAT0008172
Description Pan troglodytes ptr-miR-499 mature miRNA
Sequence 69 - AACAUCACAGCAAGUCUGUGCU - 90
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70