miRBase entry: ptr-mir-500-1

Stem-loop ptr-mir-500-1


Accession
MI0008695
Description
Pan troglodytes ptr-mir-500-1 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

cucccccucucUAAUCCUUGCUACCUGGGUGAGAgugcugucugaaugcaaugcaccugggcaaggauucugagcgcgagagc
(((.(.(.(((.(((((((((...(((((((....(((.........)))...))))))))))))))))..))).).).))).

Structure
-   c c u   -U         UAC       AGAg   ugu 
 cuc c c cuc  AAUCCUUGC   CUGGGUG    ugc   c
 ||| | | |||  |||||||||   |||||||    |||   u
 gag g g gag  uuaggaacg   gguccac    acg   g
c   a c c   uc         ---       -gua   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 49893191-49893273 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-500-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-500

Accession MIMAT0008173
Description Pan troglodytes ptr-miR-500 mature miRNA
Sequence 12 - UAAUCCUUGCUACCUGGGUGAGA - 34
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70