miRBase entry: ptr-mir-501

Stem-loop ptr-mir-501


Accession
MI0008696
Description
Pan troglodytes ptr-mir-501 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

cucuuccucucuaauccuuugucccugggugagagugcuuucugaaugcAAUGCACCCGGGCAAGGAUUCUgagagggugagc
(((.(((((((.(((((((.(.(((.(((((....(((.........)))...))))))))))))))))..))))))).))).

Structure
-   u       -u       u u   u     agag   uuu 
 cuc uccucuc  aauccuu g ccc gggug    ugc   c
 ||| |||||||  ||||||| | ||| |||||    |||   u
 gag gggagag  UUAGGAA C GGG CCCAC    Acg   g
c   u       UC       - -   -     -GUA   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 49894484-49894566 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-501
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-501

Accession MIMAT0008174
Description Pan troglodytes ptr-miR-501 mature miRNA
Sequence 50 - AAUGCACCCGGGCAAGGAUUCU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70