miRBase entry: ptr-mir-502

Stem-loop ptr-mir-502


Accession
MI0008697
Description
Pan troglodytes ptr-mir-502 precursor miRNA
Gene family
MIPF0000139; mir-500


Sequence

gcucccccucucuaAUCCUUGCUAUCUGGGUGCUAgugcuggcucaaugcaaugcaccugggcaaggauucagagagggggagcu
((((((((((((((((((((((...((((((((...(((.........)))..))))))))))))))))).))))))))))))).

Structure
-             -         UAU        UAg   ugg 
 gcucccccucucu aAUCCUUGC   CUGGGUGC   ugc   c
 ||||||||||||| |||||||||   ||||||||   |||   u
 cgagggggagaga uuaggaacg   gguccacg   acg   c
u             c         ---        -ua   uaa 


Annotation confidence Not enough data
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Genome context
chrX: 49899352-49899436 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-502
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-502

Accession MIMAT0008175
Description Pan troglodytes ptr-miR-502 mature miRNA
Sequence 15 - AUCCUUGCUAUCUGGGUGCUA - 35
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70