miRBase entry: ptr-mir-505

Stem-loop ptr-mir-505


Accession
MI0008700
Description
Pan troglodytes ptr-mir-505 precursor miRNA
Gene family
MIPF0000217; mir-505


Sequence

gaugcacccagugggggagccaggaaguauugauguuucugccaguuuagCGUCAACACUUGCUGGUUUCCUcucuggagcau
.((((..((((.(((((((((((.((((.((((((((...........)))))))).)))).))))))))))).)))).))))

Structure
g    ac    u           g    a        ucug 
 augc  ccag gggggagccag aagu uugauguu    c
 ||||  |||| ||||||||||| |||| ||||||||    c
 uacg  gguc cUCCUUUGGUC UUCA AACUGCga    a
-    -a    u           G    C        uuug 


Annotation confidence Not enough data
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Genome context
chrX: 139848044-139848126 [-]

Database links

Mature ptr-miR-505

Accession MIMAT0008178
Description Pan troglodytes ptr-miR-505 mature miRNA
Sequence 51 - CGUCAACACUUGCUGGUUUCCU - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70