miRBase entry: ptr-mir-512

Stem-loop ptr-mir-512


Accession
MI0008702
Description
Pan troglodytes ptr-mir-512 precursor miRNA
Gene family
MIPF0000518; mir-512


Sequence

cucagucuguggcacucagccuugagggcacuuucuggugucagaaugaAAGUGCUGUCAUAGCUGAGGUCcaaugacugagg
(((((((..(((..((((((..(((.(((((((((............))))))))).)))..))))))..)))..))))))).

Structure
-       ug   ca      cu   g         uggug 
 cucaguc  ugg  cucagc  uga ggcacuuuc     u
 |||||||  |||  ||||||  ||| |||||||||      
 gagucag  acC  GAGUCG  ACU UCGUGAAag     c
g       ua   UG      AU   G         uaaga 


Annotation confidence Not enough data
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Genome context
chr19: 56011919-56012001 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-512
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-512

Accession MIMAT0008180
Description Pan troglodytes ptr-miR-512 mature miRNA
Sequence 50 - AAGUGCUGUCAUAGCUGAGGUC - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70