miRBase entry: ptr-mir-515-1

Stem-loop ptr-mir-515-1


Accession
MI0008703
Description
Pan troglodytes ptr-mir-515-1 precursor miRNA
Gene family
MIPF0000020; mir-515

Literature search
1 open access papers mention ptr-mir-515-1
(2 sentences)

Sequence

cucaugcagucauucuccaaaagaaagcacuuucuguugucugaaagcaGAGUGCCUUCUUUUGGAGCGUUacuguuugaga
((((.(((((.((.(((((((((((.((((..((((((.......)))))))))).))))))))))).)).))))).)))).

Structure
-    u     c  u           a    uu      gu 
 cuca gcagu au cuccaaaagaa gcac  ucuguu  c
 |||| ||||| || ||||||||||| ||||  ||||||  u
 gagu uguca UG GAGGUUUUCUU CGUG  AGacga  g
a    u     U  C           C    --      aa 


Annotation confidence Not enough data
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Genome context
chr19: 56027150-56027231 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-515-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-515

Accession MIMAT0008181
Description Pan troglodytes ptr-miR-515 mature miRNA
Sequence 50 - GAGUGCCUUCUUUUGGAGCGUU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70