Stem-loop sequence ptr-mir-516a-1

AccessionMI0008705 (change log)
DescriptionPan troglodytes miR-516a-1 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop
   -                  c    aaa            guug  u 
5'  cucaggcugugaccuucu gagg   gaagcacuuucu    uc g
    |||||||||||||||||| ||||   ||||||||||||    || a
3'  gaguuuggcauugggaga uuuc   cuucgugaaaga    ag a
   a                  c    ---            --aa  a 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr19: 56104159-56104247 [+]
sense
ENSPTRT00000060807 ; ptr-mir-516a-1-201; exon 1
Clustered miRNAs
< 10kb from ptr-mir-516a-1
ptr-mir-521-1chr19: 56096062-56096147 [+]
ptr-mir-522chr19: 56098628-56098713 [+]
ptr-mir-519fchr19: 56099801-56099908 [+]
ptr-mir-527chr19: 56101441-56101526 [+]
ptr-mir-516a-1chr19: 56104159-56104247 [+]
ptr-mir-1283bchr19: 56105638-56105756 [+]
ptr-mir-516a-2chr19: 56108558-56108646 [+]
ptr-mir-519achr19: 56109768-56109853 [+]
Database links

Mature sequence ptr-miR-516a

Accession MIMAT0008182
Sequence

60 - 

ugcuuccuuucagagggu

 - 77

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Evidence by similarity; MI0003181
Predicted targets

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).