miRBase entry: ptr-mir-516a-1

Stem-loop ptr-mir-516a-1


Accession
MI0008705
Description
Pan troglodytes ptr-mir-516a-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugaccuucucgaggaaagaagcacuuucuguugucugaaagaaaagaaagUGCUUCCUUUCAGAGGGUuacgguuugaga
((((((((((((((((((.((((...((((((((((((....(((...)))..)))))))))))))))).)))))))))))))))))).

Structure
-                  c    aaa            guug   g 
 cucaggcugugaccuucu gagg   gaagcacuuucu    ucu  
 |||||||||||||||||| ||||   ||||||||||||    ||| a
 gaguuuggcauUGGGAGA UUUC   CUUCGUgaaaga    aga  
a                  C    ---            --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56104159-56104247 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-516a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-516a

Accession MIMAT0008182
Description Pan troglodytes ptr-miR-516a mature miRNA
Sequence 60 - UGCUUCCUUUCAGAGGGU - 77
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70