miRBase entry: ptr-mir-516b-1

Stem-loop ptr-mir-516b-1


Accession
MI0008707
Description
Pan troglodytes ptr-mir-516b-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucagacugugaccAUCUGGAGGUAAGAAGCACUUUcuguuuugugaaagaaaagaaagugcuuccuuucagaggguuacucuuugaga
((((((..((((((.((((((((...((((((((((((.((((.....)))).)))))))))))))))))))).))))))..)))))).

Structure
-      cu      A        UAA            g    g 
 cucaga  gugacc UCUGGAGG   GAAGCACUUUcu uuuu u
 ||||||  |||||| ||||||||   |||||||||||| |||| g
 gaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
a      cu      g        ---            a    a 


Annotation confidence Not enough data
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Genome context
chr19: 56084257-56084345 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ptr-mir-516b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-516b

Accession MIMAT0008183
Description Pan troglodytes ptr-miR-516b mature miRNA
Sequence 15 - AUCUGGAGGUAAGAAGCACUUU - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70