Stem-loop sequence ptr-mir-516b-1

AccessionMI0008707 (change log)
DescriptionPan troglodytes miR-516b-1 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop
   -      cu      a        uaa            g    g 
5'  cucaga  gugacc ucuggagg   gaagcacuuucu uuuu u
    ||||||  |||||| ||||||||   |||||||||||| |||| g
3'  gaguuu  cauugg agacuuuc   cuucgugaaaga aaga a
   a      cu      g        ---            a    a 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr19: 56084257-56084345 [+]
intergenic
Clustered miRNAs
< 10kb from ptr-mir-516b-1
ptr-mir-518echr19: 56077248-56077334 [+]
ptr-mir-518gchr19: 56078436-56078532 [+]
ptr-mir-518dchr19: 56082272-56082357 [+]
ptr-mir-516b-1chr19: 56084257-56084345 [+]
ptr-mir-518achr19: 56086733-56086818 [+]
ptr-mir-517b-2chr19: 56088737-56088802 [+]
ptr-mir-520hchr19: 56089945-56090033 [+]
Database links

Mature sequence ptr-miR-516b

Accession MIMAT0008183
Sequence

15 - 

aucuggagguaagaagcacuuu

 - 36

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Evidence by similarity; MI0003172
Predicted targets

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).