miRBase entry: ptr-mir-516b-2

Stem-loop ptr-mir-516b-2


Accession
MI0008708
Description
Pan troglodytes ptr-mir-516b-2 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaugaugugaccAUCUGGAGGUAAGAAGCACUUUguguuuugugaaagaaaagaaagugcuuccuuucagaggguuacucuuugaga
((((.((.((((((.((((((((...((((((((((.(.((((.....)))).).)))))))))))))))))).))))))))..)))).

Structure
-    -u  u      A        UAA          g g    g 
 cuca  ga gugacc UCUGGAGG   GAAGCACUUU u uuuu u
 ||||  || |||||| ||||||||   |||||||||| | |||| g
 gagu  cu cauugg agacuuuc   cuucgugaaa a aaga a
a    uu  -      g        ---          g a    a 


Annotation confidence Not enough data
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Genome context
chr19: 56072399-56072487 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-516b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-516b

Accession MIMAT0008183
Description Pan troglodytes ptr-miR-516b mature miRNA
Sequence 15 - AUCUGGAGGUAAGAAGCACUUU - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70