miRBase entry: ptr-mir-517a

Stem-loop ptr-mir-517a


Accession
MI0008709
Description
Pan troglodytes ptr-mir-517a precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcagugacccucuagauggaagcacugucuguuguauaaaagaaaagAUCGUGCAUCCCUUUAGAGUGUuacuguuugaga
(((((((((((((.(((((((.(((.((((.((((...............)))).)))).))).))))))).))))))))))))).

Structure
-             c       u   a    u    guugua 
 cucaggcagugac cucuaga gga gcac gucu      u
 ||||||||||||| ||||||| ||| |||| ||||      a
 gaguuugucauUG GAGAUUU CCU CGUG UAga      a
a             U       C   A    C    aaagaa 


Annotation confidence Not enough data
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Genome context
chr19: 56059195-56059280 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-517a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-517a

Accession MIMAT0008184
Description Pan troglodytes ptr-miR-517a mature miRNA
Sequence 53 - AUCGUGCAUCCCUUUAGAGUGU - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70