miRBase entry: ptr-mir-517b-1

Stem-loop ptr-mir-517b-1


Accession
MI0008710
Description
Pan troglodytes ptr-mir-517b-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ugacCCUCUAGAUGGAAGCACUGUCUguugucuuaagaaaagaucgugcaucccuuuagaguguuac
((((.(((((((.(((.((((.((((.((........)).)))).)))).))).))))))).)))).

Structure
-    C       U   A    U    g  guc 
 ugac CUCUAGA GGA GCAC GUCU uu   u
 |||| ||||||| ||| |||| |||| ||    
 auug gagauuu ccu cgug uaga aa   u
c    u       c   a    c    a  gaa 


Annotation confidence Not enough data
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Genome context
chr19: 56068030-56068096 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-517b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-517b

Accession MIMAT0008185
Description Pan troglodytes ptr-miR-517b mature miRNA
Sequence 5 - CCUCUAGAUGGAAGCACUGUCU - 26
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70