miRBase entry: ptr-mir-518a

Stem-loop ptr-mir-518a


Accession
MI0008712
Description
Pan troglodytes ptr-mir-518a precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugacucugcaaagggaagcccuuucuguugucuaaaagaaaaGAAAGCGCUUCCCUUUGCUGGAuuacgguuugaga
((((((((((((.(((((((((((((((.((((((....(((...)))..)))))).)))))))))))).))))))))))))))).

Structure
-            c   -            c      guug   a 
 cucaggcuguga ucu gcaaagggaagc cuuucu    ucu  
 |||||||||||| ||| |||||||||||| ||||||    ||| a
 gaguuuggcauu AGG CGUUUCCCUUCG GAAAGa    aga  
a            -   U            C      --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56086733-56086818 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-518a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-518a

Accession MIMAT0008186
Description Pan troglodytes ptr-miR-518a mature miRNA
Sequence 52 - GAAAGCGCUUCCCUUUGCUGGA - 73
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70