miRBase entry: ptr-mir-518b

Stem-loop ptr-mir-518b


Accession
MI0008713
Description
Pan troglodytes ptr-mir-518b precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

caugcuguggcccuccagagggaagcgcuuucuguugucugaaagaaaaCAAAGCGCUCCCCUUUAGAGGUuuacgguuuga
((.(((((((.((((.((((((.(((((((..((((.(((...))).))))))))))).)))))).)))).))))))).)).

Structure
-  u       c    c      a       uc    g   g 
 ca gcugugg ccuc agaggg agcgcuu  uguu ucu  
 || ||||||| |||| |||||| |||||||  |||| ||| a
 gu uggcauu GGAG UUUCCC UCGCGAA  ACaa aga  
a  u       U    A      C       --    a   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr19: 56050864-56050945 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from ptr-mir-518b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-518b

Accession MIMAT0008187
Description Pan troglodytes ptr-miR-518b mature miRNA
Sequence 50 - CAAAGCGCUCCCCUUUAGAGGU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70