Stem-loop sequence ptr-mir-518b

AccessionMI0008713 (change log)
DescriptionPan troglodytes miR-518b stem-loop
Gene family MIPF0000020; mir-515
Stem-loop
   -  u      gc    c      a       uc    g  u 
5'  ca gcugug  ccuc agaggg agcgcuu  uguu uc g
    || ||||||  |||| |||||| |||||||  |||| || a
3'  gu uggcau  ggag uuuccc ucgcgaa  acaa ag a
   a  u      uu    a      c       --    a  a 
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr19: 56050864-56050945 [+]
sense
ENSPTRT00000060742 ; ptr-mir-518b-201; exon 1
Clustered miRNAs
< 10kb from ptr-mir-518b
ptr-mir-526bchr19: 56042520-56042601 [+]
ptr-mir-519bchr19: 56043334-56043413 [+]
ptr-mir-525chr19: 56045667-56045750 [+]
ptr-mir-523chr19: 56046532-56046610 [+]
ptr-mir-518fchr19: 56048137-56048222 [+]
ptr-mir-520bchr19: 56049349-56049408 [+]
ptr-mir-518bchr19: 56050864-56050945 [+]
ptr-mir-526a-1chr19: 56054378-56054461 [+]
ptr-mir-520cchr19: 56055581-56055666 [+]
ptr-mir-518cchr19: 56056864-56056963 [+]
ptr-mir-524chr19: 56057933-56058018 [+]
ptr-mir-517achr19: 56059195-56059280 [+]
ptr-mir-519dchr19: 56060274-56060360 [+]
Database links

Mature sequence ptr-miR-518b

Accession MIMAT0008187
Sequence

50 - 

caaagcgcuccccuuuagaggu

 - 71

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Evidence by similarity; MI0003156
Predicted targets

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).