miRBase entry: ptr-mir-518d

Stem-loop ptr-mir-518d


Accession
MI0008715
Description
Pan troglodytes ptr-mir-518d precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cccaugcugugacccucuagagggaagcacuuucuguugucugaaagaaacCAAAGCGCUUCCCUUUGGAGCauuacgguuugaga
..((.(((((((..((((((((((((((.((((..(((.(((...)))))).)))).))))))))))))))..))))))).))...

Structure
-cc  u       cc              a    cu   g   g 
   ca gcuguga  cucuagagggaagc cuuu  guu ucu  
   || |||||||  |||||||||||||| ||||  ||| ||| a
   gu uggcauu  GAGGUUUCCCUUCG GAAA  caa aga  
aga  u       aC              C    -C   -   a 


Annotation confidence Not enough data
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Genome context
chr19: 56082272-56082357 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-518d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-518d

Accession MIMAT0008189
Description Pan troglodytes ptr-miR-518d mature miRNA
Sequence 52 - CAAAGCGCUUCCCUUUGGAGC - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70