miRBase entry: ptr-mir-518f

Stem-loop ptr-mir-518f


Accession
MI0008717
Description
Pan troglodytes ptr-mir-518f precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaugcugugacccucuagagggaagcacuuucucuugucuaaaagaaaaGAAAGCGCUUCUCUUUAGAGGauuacucuuugaga
((((....((((.(((((((((((((((.(((((((((......))))...))))).))))))))))))))).))))....)))).

Structure
-    ugcu    c               a     ---    gu 
 cuca    guga ccucuagagggaagc cuuuc   ucuu  c
 ||||    |||| ||||||||||||||| |||||   ||||   
 gagu    cauu GGAGAUUUCUCUUCG GAAAG   agaa  u
a    uucu    a               C     aaa    aa 


Annotation confidence Not enough data
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Genome context
chr19: 56048137-56048222 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-518f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-518f

Accession MIMAT0008191
Description Pan troglodytes ptr-miR-518f mature miRNA
Sequence 52 - GAAAGCGCUUCUCUUUAGAGG - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70