miRBase entry: ptr-mir-519a

Stem-loop ptr-mir-519a


Accession
MI0008718
Description
Pan troglodytes ptr-mir-519a precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugucccucuacagggaagcgcuuucuguugucugaaagaaaggAAAGUGCAUCCUUUUAGAGUGUuacuguuugaga
(((((((.(((.(.(((((.(((((.(((((((((....(((...)))..))))))))).))))).))))).).))).))))))).

Structure
-       u   u c     c     a         guug   g 
 cucaggc gug c cucua aggga gcgcuuucu    ucu  
 ||||||| ||| | ||||| ||||| |||||||||    ||| a
 gaguuug cau G GAGAU UUCCU CGUGAAAgg    aga  
a       u   U U     U     A         --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56109768-56109853 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-519a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-519a

Accession MIMAT0008192
Description Pan troglodytes ptr-miR-519a mature miRNA
Sequence 53 - AAAGUGCAUCCUUUUAGAGUGU - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70