miRBase entry: ptr-mir-519b

Stem-loop ptr-mir-519b


Accession
MI0008719
Description
Pan troglodytes ptr-mir-519b precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

augcugugacccucuagagggaagcgcuuucuguugucugaaagaaaagAAAGUGCAUCCUUUUAGAGGUUuacuguuug
..((.((((.((((((((((((.(((((((((....(((...)))..))))))))).)))))))))))).)))).))...

Structure
-au  u    c            a         guug   g 
   gc guga ccucuagaggga gcgcuuucu    ucu  
   || |||| |||||||||||| |||||||||    ||| a
   ug cauU GGAGAUUUUCCU CGUGAAAga    aga  
guu  u    U            A         --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56043334-56043413 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from ptr-mir-519b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-519b

Accession MIMAT0008193
Description Pan troglodytes ptr-miR-519b mature miRNA
Sequence 50 - AAAGUGCAUCCUUUUAGAGGUU - 71
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70