miRBase entry: ptr-mir-519c

Stem-loop ptr-mir-519c


Accession
MI0008720
Description
Pan troglodytes ptr-mir-519c precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucagccugugacccucuagagggaagcgcuuucuguugucugaaagaaaagAAAGUGCAUCUUUUUAGAGGAUuacaguuugaga
(((((.((((((.((((((((((((.(((((((((....(((...)))..))))))))).)))))))))))).)))))).))))).

Structure
-     c      c            a         guug   g 
 cucag cuguga ccucuagaggga gcgcuuucu    ucu  
 ||||| |||||| |||||||||||| |||||||||    ||| a
 gaguu gacauU GGAGAUUUUUCU CGUGAAAga    aga  
a     u      A            A         --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56034635-56034720 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-519c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-519c

Accession MIMAT0008194
Description Pan troglodytes ptr-miR-519c mature miRNA
Sequence 53 - AAAGUGCAUCUUUUUAGAGGAU - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70