miRBase entry: ptr-mir-519d

Stem-loop ptr-mir-519d


Accession
MI0008721
Description
Pan troglodytes ptr-mir-519d precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cccaugcugugacccuccaaagggaagcgcuuucuguuuguuuucucucaaaCAAAGUGCCUCCCUUUAGAGUGuuaccguuuggga
((((.((.(((((.(((.(((((((.((((((..((((((........)))))))))))).))))))).))).))))).)).)))).

Structure
-    u  u     c   c       a      uc      uuu 
 ccca gc gugac cuc aaaggga gcgcuu  uguuug   u
 |||| || ||||| ||| ||||||| ||||||  ||||||    
 gggu ug cauuG GAG UUUCCCU CGUGAA  ACaaac   c
a    u  c     U   A       C      --      ucu 


Annotation confidence Not enough data
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Genome context
chr19: 56060274-56060360 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-519d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-519d

Accession MIMAT0008195
Description Pan troglodytes ptr-miR-519d mature miRNA
Sequence 53 - CAAAGUGCCUCCCUUUAGAGUG - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70