miRBase entry: ptr-mir-519e

Stem-loop ptr-mir-519e


Accession
MI0008722
Description
Pan troglodytes ptr-mir-519e precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaugcagucauucuccaaaagggagcacuuucuguugucugaaagaaaacaAAGUGCCUCCUUUUAGAGUGUUacuguuugaga
((((.(((((.((.(((.(((((((.((((((..((((.(((...))).)))))))))).))))))).))).)).))))).)))).

Structure
-    u     c  u   c       a      uc    g   g 
 cuca gcagu au cuc aaaaggg gcacuu  uguu ucu  
 |||| ||||| || ||| ||||||| ||||||  |||| ||| a
 gagu uguca UG GAG UUUUCCU CGUGAA  acaa aga  
a    u     U  U   A       C      --    a   a 


Annotation confidence Not enough data
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Genome context
chr19: 56028091-56028176 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-519e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-519e

Accession MIMAT0008196
Description Pan troglodytes ptr-miR-519e mature miRNA
Sequence 54 - AAGUGCCUCCUUUUAGAGUGUU - 75
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70