Stem-loop sequence ptr-mir-519e

Accession MI0008722
Description Pan troglodytes miR-519e stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
-    u     c  u   c      ga      uc    g  u 
 cuca gcagu au cuc aaaagg  gcacuu  uguu uc g
 |||| ||||| || ||| ||||||  ||||||  |||| || a
 gagu uguca ug gag uuuucc  cgugaa  acaa ag a
a    u     u  u   a      uc      --    a  a
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Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
19: 58588116-58588201 [+]
intergenic
Clustered miRNAs
< 10kb from ptr-mir-519e
ptr-mir-1323 19: 58580131-58580202 [+]
ptr-mir-498 19: 58582355-58582478 [+]
ptr-mir-520e 19: 58583877-58583962 [+]
ptr-mir-515-1 19: 58587175-58587256 [+]
ptr-mir-519e 19: 58588116-58588201 [+]
ptr-mir-520f 19: 58590323-58590408 [+]
ptr-mir-515-2 19: 58593186-58593267 [+]
ptr-mir-519c 19: 58594657-58594742 [+]
ptr-mir-1283 19: 58596670-58596755 [+]
Database links

Mature sequence ptr-miR-519e

Accession MIMAT0008196
Sequence

54 -  

aagugccuccuuuuagaguguu

 - 75

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Evidence by similarity; MI0003145

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).