miRBase entry: ptr-mir-520a

Stem-loop ptr-mir-520a


Accession
MI0008723
Description
Pan troglodytes ptr-mir-520a precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucaggcugugacccuccagagggaaguacuuucuguugucugagagaaaagAAAGUGCUUCCCUUUGGACUGUugcgguuugag
((((((((((((..((((((((((((((((((((.((.((...)).)).))))))))))))))))))))..)))))))))))).

Structure
-            cc                    g  g  u 
 ucaggcugugac  uccagagggaaguacuuucu uu uc  
 ||||||||||||  |||||||||||||||||||| || || g
 aguuuggcguUG  AGGUUUCCCUUCGUGAAAga aa ag  
g            UC                    a  g  a 


Annotation confidence Not enough data
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Genome context
chr19: 56039028-56039111 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from ptr-mir-520a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-520a

Accession MIMAT0008197
Description Pan troglodytes ptr-miR-520a mature miRNA
Sequence 52 - AAAGUGCUUCCCUUUGGACUGU - 73
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70