miRBase entry: ptr-mir-520b

Stem-loop ptr-mir-520b


Accession
MI0008724
Description
Pan troglodytes ptr-mir-520b precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ccucuacagggaagcgcuuucuguugucugaaagaaaagAAAGUGCUUCCUUUUAGAGGG
((((((.(((((((((((((((....(((...)))..))))))))))))))).)))))).

Structure
-      c               guug   g 
 ccucua agggaagcgcuuucu    ucu  
 |||||| |||||||||||||||    ||| a
 GGAGAU UUCCUUCGUGAAAga    aga  
G      U               --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56049349-56049408 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-520b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-520b

Accession MIMAT0008198
Description Pan troglodytes ptr-miR-520b mature miRNA
Sequence 40 - AAAGUGCUUCCUUUUAGAGGG - 60
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70