miRBase entry: ptr-mir-520d

Stem-loop ptr-mir-520d


Accession
MI0008726
Description
Pan troglodytes ptr-mir-520d precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaagcugugacucuacaaagggaagcccuuucuguugucuaaaagaaaagAAAGUGCUUCUCUUUGGUGGGUuacgguuugaga
(((((((((((((((..(((((((((((.((((((....(((...)))..)))))).)))))))))))..))))))))))))))).

Structure
-               ua           c      guug   a 
 cucaagcugugacuc  caaagggaagc cuuucu    ucu  
 |||||||||||||||  ||||||||||| ||||||    ||| a
 gaguuuggcauUGGG  GUUUCUCUUCG GAAAga    aga  
a               UG           U      --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56067066-56067151 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-520d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-520d

Accession MIMAT0008200
Description Pan troglodytes ptr-miR-520d mature miRNA
Sequence 53 - AAAGUGCUUCUCUUUGGUGGGU - 74
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70