miRBase entry: ptr-mir-520f

Stem-loop ptr-mir-520f


Accession
MI0008728
Description
Pan troglodytes ptr-mir-520f precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cucaggcugugacccucuaaagggaagcgcuuucuguggucagaaagaaaagcAAGUGCUUCCUUUUAGAGGGUUaccguuuggga
(((((((.((((((((((((((((((((((((((((....)))).........)))))))))))))))))))))))).))))))).

Structure
-       u                        ---------    u 
 cucaggc gugacccucuaaagggaagcgcuu         ucug g
 ||||||| ||||||||||||||||||||||||         ||||  
 ggguuug caUUGGGAGAUUUUCCUUCGUGAA         agac g
a       c                        cgaaaagaa    u 


Annotation confidence Not enough data
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Genome context
chr19: 56030298-56030383 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from ptr-mir-520f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-520f

Accession MIMAT0008202
Description Pan troglodytes ptr-miR-520f mature miRNA
Sequence 54 - AAGUGCUUCCUUUUAGAGGGUU - 75
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70