miRBase entry: ptr-mir-520g

Stem-loop ptr-mir-520g


Accession
MI0008729
Description
Pan troglodytes ptr-mir-520g precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cccaugcugugacccucuagaggacgcacuuucuguuuguugucugagaaaaaACAAAGUGCUUCCCUUUAGAGUGUuaccauuuggga
((((....(((((.((((((((((.((((((..(((((.............))))))))))).).))))))))).)))))....)))).

Structure
-    ugcu     c         - c      uc     guugu 
 ccca    gugac cucuagagg a gcacuu  uguuu     c
 ||||    ||||| ||||||||| | ||||||  |||||     u
 gggu    cauUG GAGAUUUCC U CGUGAA  ACAaa     g
a    uuac     U         C U      --     aaaga 


Annotation confidence Not enough data
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Genome context
chr19: 56069121-56069209 [+]
Clustered miRNAs
9 other miRNAs are < 10 kb from ptr-mir-520g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-520g

Accession MIMAT0008203
Description Pan troglodytes ptr-miR-520g mature miRNA
Sequence 54 - ACAAAGUGCUUCCCUUUAGAGUGU - 77
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70