miRBase entry: ptr-mir-520h

Stem-loop ptr-mir-520h


Accession
MI0008730
Description
Pan troglodytes ptr-mir-520h precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

cccacgcugugacccucuagaggaagcacuuucuguuuguugucugagaaaaaACAAAGUGCUUCCCUUUAGAGUGUuaccuuuuggga
((((....(((((.(((((((((((((((((..(((((.............))))))))))))).))))))))).)))))....)))).

Structure
-    cgcu     c         -        uc     guugu 
 ccca    gugac cucuagagg aagcacuu  uguuu     c
 ||||    ||||| ||||||||| ||||||||  |||||     u
 gggu    cauUG GAGAUUUCC UUCGUGAA  ACAaa     g
a    uuuc     U         C        --     aaaga 


Annotation confidence Not enough data
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Genome context
chr19: 56089945-56090033 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-520h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-520h

Accession MIMAT0008204
Description Pan troglodytes ptr-miR-520h mature miRNA
Sequence 54 - ACAAAGUGCUUCCCUUUAGAGUGU - 77
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70