Stem-loop sequence ptr-mir-522

Accession MI0008733
Description Pan troglodytes miR-522 stem-loop
Gene family MIPF0000020; mir-515
Stem-loop 
-     -  u   u c            g  c     guug  u 
 cucag gc gug c cucuagagggaa cg uuucu    uc g
 ||||| || ||| | |||||||||||| || |||||    || a
 gaguu cg cau g gagauuucccuu gu aaaga    ag a
a     u  -   u u            g  a     --aa  a
Get sequence
Genome context
Coordinates (PanTro2.1.4) Overlapping transcripts
19: 58660239-58660324 [+]
sense
Clustered miRNAs
< 10kb from ptr-mir-522
ptr-mir-520h 19: 58650839-58650927 [+]
ptr-mir-521-1 19: 58656954-58657039 [+]
ptr-mir-522 19: 58660239-58660324 [+]
ptr-mir-527 19: 58663052-58663137 [+]
ptr-mir-516a-1 19: 58665767-58665855 [+]
ptr-mir-516a-2 19: 58670166-58670254 [+]
Database links
  • ENTREZGENE: 100316203;MIR522

Mature sequence ptr-miR-522

Accession MIMAT0008206
Sequence

53 -  

aaaaugguucccuuuagagugu

 - 74

Get sequence
Evidence by similarity; MI0003177

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).