miRBase entry: ptr-mir-525

Stem-loop ptr-mir-525


Accession
MI0008736
Description
Pan troglodytes ptr-mir-525 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucaagcugcgacucuccagagggaugcacuuucucuuaugugaaaaaauaGAAGGCGCUUCCCUUUAGAGCGuuacgguuuggg
((((((((.(((.(((.(((((((.((.((((((...............)))))).)).))))))).))).))).)))))))).

Structure
-        c   u   c       u  a      cuuaug 
 ucaagcug gac cuc agaggga gc cuuucu      u
 |||||||| ||| ||| ||||||| || ||||||      g
 gguuuggc uuG GAG UUUCCCU CG GGAAGa      a
g        a   C   A       U  C      uaaaaa 


Annotation confidence Not enough data
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Genome context
chr19: 56045667-56045750 [+]
Clustered miRNAs
10 other miRNAs are < 10 kb from ptr-mir-525
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-525

Accession MIMAT0008209
Description Pan troglodytes ptr-miR-525 mature miRNA
Sequence 51 - GAAGGCGCUUCCCUUUAGAGCG - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70