miRBase entry: ptr-mir-526a-1

Stem-loop ptr-mir-526a-1


Accession
MI0008737
Description
Pan troglodytes ptr-mir-526a-1 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ucaggcugugaccCUCUAGAGGGAAGCACUUUCUGuugcuugaaagaagagaaagcgcuuccuuuuagaggauuacucuuugag
(((((..((((.(((((((((((((((.((((((.((.((....)))).)))))).))))))))))))))).))))..))))).

Structure
-     cu    c               A      G  g  u 
 ucagg  guga cCUCUAGAGGGAAGC CUUUCU uu cu g
 |||||  |||| ||||||||||||||| |||||| || ||  
 aguuu  cauu ggagauuuuccuucg gaaaga aa ga a
g     cu    a               c      g  -  a 


Annotation confidence Not enough data
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Genome context
chr19: 56054378-56054461 [+]
Clustered miRNAs
11 other miRNAs are < 10 kb from ptr-mir-526a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-526a

Accession MIMAT0008210
Description Pan troglodytes ptr-miR-526a mature miRNA
Sequence 14 - CUCUAGAGGGAAGCACUUUCUG - 35
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70