miRBase entry: ptr-mir-526a-2

Stem-loop ptr-mir-526a-2


Accession
MI0008738
Description
Pan troglodytes ptr-mir-526a-2 precursor miRNA
Gene family
MIPF0000020; mir-515


Sequence

ugaccCUCUAGAGGGAAGCACUUUCUGuugucugaaagaaaagaacaugcauccuuucagaggguuac
(((((((((.((((((.(((..((((....(((...)))..))))..))).)))))).))))))))).

Structure
-         A      A   CU    Guug   g 
 ugaccCUCU GAGGGA GCA  UUCU    ucu  
 ||||||||| |||||| |||  ||||    ||| a
 auugggaga uuuccu cgu  aaga    aga  
c         c      a   ac    --aa   a 


Annotation confidence Not enough data
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Genome context
chr19: 56073901-56073968 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-526a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-526a

Accession MIMAT0008210
Description Pan troglodytes ptr-miR-526a mature miRNA
Sequence 6 - CUCUAGAGGGAAGCACUUUCUG - 27
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70