miRBase entry: ptr-mir-532

Stem-loop ptr-mir-532


Accession
MI0008741
Description
Pan troglodytes ptr-mir-532 precursor miRNA
Gene family
MIPF0000113; mir-188


Sequence

gacuugcuuucucuccuccaugccuugaguguaggaccguuggcaucuuaauuacCCUCCCACACCCAAGGCUUGCAgaagagcgagccu
.....((((.((((.((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)).)))).))))..

Structure
gacuu    u    c  c  u      a    a   cc  uggca 
     gcuu cucu cu ca gccuug gugu gga  gu     u
     |||| |||| || || |||||| |||| |||  ||     c
     cgag gaga gA GU CGGAAC CACA CCU  ca     u
---uc    c    a  C  U      C    C   CC  uuaau 


Annotation confidence Not enough data
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Genome context
chrX: 49887896-49887985 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from ptr-mir-532
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-532

Accession MIMAT0008213
Description Pan troglodytes ptr-miR-532 mature miRNA
Sequence 56 - CCUCCCACACCCAAGGCUUGCA - 77
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70