miRBase entry: ptr-mir-539

Stem-loop ptr-mir-539


Accession
MI0008742
Description
Pan troglodytes ptr-mir-539 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

uacuugaGGAGAAAUUAUCCUUGGUGUGUucgcuuuauuuaugaugaaucauacaaggacaauuucuuuuugaguau
((((((((((((((((.((((((.(((((((((.........).)))).)))))))))).)))))))))))))))).

Structure
-                A      G    -    - uuu 
 uacuugaGGAGAAAUU UCCUUG UGUG Uucg c   a
 |||||||||||||||| |||||| |||| |||| |   u
 augaguuuuucuuuaa aggaac auac aagu g   u
u                c      -    u    a uau 


Annotation confidence Not enough data
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Genome context
chr14: 86295556-86295632 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from ptr-mir-539
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-539

Accession MIMAT0008214
Description Pan troglodytes ptr-miR-539 mature miRNA
Sequence 8 - GGAGAAAUUAUCCUUGGUGUGU - 29
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70