Stem-loop sequence ptr-mir-539

AccessionMI0008742 (change log)
DescriptionPan troglodytes miR-539 stem-loop
Gene family MIPF0000018; mir-154
Stem-loop 
   -    ug          a      g    -    - uuu 
5'  uacu  aggagaaauu uccuug ugug uucg c   a
    ||||  |||||||||| |||||| |||| |||| |   u
3'  auga  uuuucuuuaa aggaac auac aagu g   u
   u    gu          c      -    u    a uau
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Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Pan_tro3.0; GCA_000001515.5) Overlapping transcripts
chr14: 86295556-86295632 [+]
sense
ENSPTRT00000054683 ; ptr-mir-539-201; exon 1
Clustered miRNAs
< 10kb from ptr-mir-539
ptr-mir-376cchr14: 86287939-86288003 [+]
ptr-mir-376a-2chr14: 86288317-86288395 [+]
ptr-mir-654chr14: 86288467-86288546 [+]
ptr-mir-376bchr14: 86288684-86288782 [+]
ptr-mir-376a-1chr14: 86289030-86289096 [+]
ptr-mir-300chr14: 86289611-86289692 [+]
ptr-mir-1185-1chr14: 86291220-86291304 [+]
ptr-mir-1185-2chr14: 86292441-86292525 [+]
ptr-mir-381chr14: 86294164-86294237 [+]
ptr-mir-487bchr14: 86294699-86294781 [+]
ptr-mir-539chr14: 86295556-86295632 [+]
ptr-mir-889chr14: 86296136-86296213 [+]
ptr-mir-544chr14: 86296887-86296976 [+]
ptr-mir-655chr14: 86297767-86297874 [+]
ptr-mir-487achr14: 86300680-86300758 [+]
ptr-mir-382chr14: 86302540-86302614 [+]
ptr-mir-134chr14: 86302921-86302992 [+]
ptr-mir-668chr14: 86303493-86303557 [+]
ptr-mir-485chr14: 86303654-86303725 [+]
ptr-mir-453chr14: 86304425-86304503 [+]
Database links

Mature sequence ptr-miR-539

Accession MIMAT0008214
Sequence

8 -  

ggagaaauuauccuuggugugu

 - 29

Get sequence
Evidence by similarity; MI0003514
Predicted targets

References

1
PMID:18760970 "Computational identification of novel microRNA homologs in the chimpanzee genome" Baev V, Daskalova E, Minkov I Comput Biol Chem. 33:62-70(2009).