miRBase entry: ptr-mir-543

Stem-loop ptr-mir-543


Accession
MI0008743
Description
Pan troglodytes ptr-mir-543 precursor miRNA
Gene family
MIPF0000110; mir-329


Sequence

acuuaaugagaaguugcccguguuuuuuucgcuuuauuugugacgAAACAUUCGCGGUGCACUUCUUcuucaguauc
(((.((.(((((((.(((((((..(.((((((.........).))))).)..))))).))))))))).)).)))...

Structure
---   u  u       u  -     uu u     - uuu 
   acu aa gagaagu gc ccgug  u uuucg c   a
   ||| || ||||||| || |||||  | ||||| |   u
   uga uu UUCUUCA CG GGCGC  A AAAgc g   u
cua   c  c       -  U     UU C     a ugu 


Annotation confidence Not enough data
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Genome context
chr14: 86280507-86280583 [+]
Clustered miRNAs
17 other miRNAs are < 10 kb from ptr-mir-543
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-543

Accession MIMAT0008215
Description Pan troglodytes ptr-miR-543 mature miRNA
Sequence 46 - AAACAUUCGCGGUGCACUUCUU - 67
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70