miRBase entry: ptr-mir-545

Stem-loop ptr-mir-545


Accession
MI0008745
Description
Pan troglodytes ptr-mir-545 precursor miRNA
Gene family
MIPF0000098; mir-95


Sequence

cccagcccggcacauuaguaggccucaguaaauguuuauuagaugaauaaaugaaugacucaUCAGCAAACAUUUAUUGUGUGCcugcuaaagugagcuccacag
...(((....(((.((((((((((.((((((((((((.((.(((((.............))))))).)))))))))))).).))))))))).))).)))......

Structure
---ccc   ccgg   a         - u            a  a     auaaa 
      agc    cac uuaguaggc c caguaaauguuu uu gauga     u
      |||    ||| ||||||||| | |||||||||||| || |||||     g
      ucg    gug aaucgucCG G GUUAUUUACAAA GA CUacu     a
gacacc   ---a   a         U U            C  -     cagua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chrX: 73670020-73670124 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-545
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-545

Accession MIMAT0008217
Description Pan troglodytes ptr-miR-545 mature miRNA
Sequence 63 - UCAGCAAACAUUUAUUGUGUGC - 84
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70